Tutorials

• Tutorial for antigen-HLAI binding prediction with deepAntigen
  • Import relevant packages
  • Download antigen-HLAI data
  • Inference anitgen-HLAI binding at the sequence level using deepAntigen
  • Train deepAntigen using sequence-level anitgen-HLAI binding data
  • Inference anitgen-HLAI binding at the atom level using deepAntigen
  • Fine-tune deepAntigen using antigen-HLAI crystal structure data
• Tutorial for antigen-HLAII binding prediction with deepAntigen
  • Import relevant packages
  • Download antigen-HLAII data
  • Inference anitgen-HLAII binding at the sequence level using deepAntigen
  • Train deepAntigen using sequence-level anitgen-HLAII binding data
  • Inference anitgen-HLAII binding at the atom level using deepAntigen
  • Fine-tune deepAntigen using antigen-HLAII crystal structure data
• Tutorial for antigen-TCR binding prediction with deepAntigen
  • Import relevant packages
  • Download antigen-TCR data
  • Inference anitgen-TCR binding at the sequence level using deepAntigen
  • Train deepAntigen using sequence-level anitgen-TCR binding data
  • Inference anitgen-TCR binding at the atom level using deepAntigen
  • Fine-tune deepAntigen using antigen-TCR crystal structure data